CT Cadaveric dataset for Radiomics features stability assessment in lumbar vertebrae.

Radiomics features (RFs) studies have showed limitations in the reproducibility of RFs in different acquisition settings. To date, reproducibility studies using CT images mainly rely on phantoms, due to the harness of patient exposure to X-rays. The provided CadAIver dataset has the aims of evaluating how CT scanner parameters effect radiomics features on cadaveric donor. The dataset comprises 112 unique CT acquisitions of a cadaveric truck acquired on 3 different CT scanners varying KV, mA, field-of-view, and reconstruction kernel settings. Technical validation of the CadAIver dataset comprises a comprehensive univariate and multivariate GLM approach to assess stability of each RFs extracted from lumbar vertebrae. The complete dataset is publicly available to be applied for future research in the RFs field, and could foster the creation of a collaborative open CT image database to increase the sample size, the range of available scanners, and the available body districts.

Identifying prognostic factors for survival in intensive care unit patients with SIRS or sepsis by machine learning analysis on electronic health records.

BACKGROUND: Systemic inflammatory response syndrome (SIRS) and sepsis are the most common causes of in-hospital death. However, the characteristics associated with the improvement in the patient conditions during the ICU stay were not fully elucidated for each population as well as the possible differences between the two. GOAL: The aim of this study is to highlight the differences between the prognostic clinical features for the survival of patients diagnosed with SIRS and those of patients diagnosed with sepsis by using a multi-variable predictive modeling approach with a reduced set of easily available measurements collected at the admission to the intensive care unit (ICU). METHODS: Data were collected from 1,257 patients (816 non-sepsis SIRS and 441 sepsis) admitted to the ICU. We compared the performance of five machine learning models in predicting patient survival. Matthews correlation coefficient (MCC) was used to evaluate model performances and feature importance, and by applying Monte Carlo stratified Cross-Validation. RESULTS: Extreme Gradient Boosting (MCC = 0.489) and Logistic Regression (MCC = 0.533) achieved the highest results for SIRS and sepsis cohorts, respectively. In order of importance, APACHE II, mean platelet volume (MPV), eosinophil counts (EoC), and C-reactive protein (CRP) showed higher importance for predicting sepsis patient survival, whereas, SOFA, APACHE II, platelet counts (PLTC), and CRP obtained higher importance in the SIRS cohort. CONCLUSION: By using complete blood count parameters as predictors of ICU patient survival, machine learning models can accurately predict the survival of SIRS and sepsis ICU patients. Interestingly, feature importance highlights the role of CRP and APACHE II in both SIRS and sepsis populations. In addition, MPV and EoC are shown to be important features for the sepsis population only, whereas SOFA and PLTC have higher importance for SIRS patients.

Comparative Assessment of Physiological Responses to Emotional Elicitation by Auditory and Visual Stimuli.

The study of emotions through the analysis of the induced physiological responses gained increasing interest in the past decades. Emotion-related studies usually employ films or video clips, but these stimuli do not give the possibility to properly separate and assess the emotional content provided by sight or hearing in terms of physiological responses. In this study we have devised an experimental protocol to elicit emotions by using, separately and jointly, pictures and sounds from the widely used International Affective Pictures System and International Affective Digital Sounds databases. We processed galvanic skin response, electrocardiogram, blood volume pulse, pupillary signal and electroencephalogram from 21 subjects to extract both autonomic and central nervous system indices to assess physiological responses in relation to three types of stimulation: auditory, visual, and auditory/visual. Results show a higher galvanic skin response to sounds compared to images. Electrocardiogram and blood volume pulse show different trends between auditory and visual stimuli. The electroencephalographic signal reveals a greater attention paid by the subjects when listening to sounds compared to watching images. In conclusion, these results suggest that emotional responses increase during auditory stimulation at both central and peripheral levels, demonstrating the importance of sounds for emotion recognition experiments and also opening the possibility toward the extension of auditory stimuli in other fields of psychophysiology. Clinical and Translational Impact Statement- These findings corroborate auditory stimuli's importance in eliciting emotions, supporting their use in studying affective responses, e.g., mood disorder diagnosis, human-machine interaction, and emotional perception in pathology.

Statistical shape modeling-based algorithm for replacing missing beats in blood pressure signals.

In clinical environments, such as the Intensive Care Unit (ICU), continuous and uninterrupted monitoring of vital signs is critical for the early detection of patient deterioration and prompt intervention. Since data collected in these settings are often corrupted by noise, artifacts, or recording gaps, it is important to estimate missing data for a more accurate signal assessment.In this study, we propose an automatic algorithm for reconstructing of arterial blood pressure signal waveforms. The methodological core of the algorithm is based on the idea of statistical shape modeling, which basically estimates the shape variation of beat waveforms in order to reconstruct them in noisy segments. The waveform reconstruction is achieved by combining the average beat template from a 90-second segment of clean signal preceding the gap with the main shape variations of the estimated waveform.The algorithm was validated using arterial blood pressure recordings from 9 subjects admitted in the ICU and collected in the MIMIC-III Waveform Database, each lasting 1 hour and sampled at 125 Hz. For each record, ten fictitious gaps were created, and the reconstructed segments were compared to the original signals with the metrics proposed within the PhysioNet / Computing in Cardiology Challenge 2010. Results demonstrate the excellent performance of the proposed algorithm, with overall averages of both Q1 and Q2 metrics greater than 0.85.

A Screening Platform for Hearing Loss and Cognitive Decline: WHISPER (Widespread Hearing Impairment Screening and PrEvention of Risk).

The WHISPER (Widespread Hearing Impairment Screening and PrEvention of Risk) platform was recently developed for screening for hearing loss (HL) and cognitive decline in adults. It includes a battery of tests (a risk factors (RF) questionnaire, a language-independent speech-in-noise test, and cognitive tests) and provides a pass/fail outcome based on the analysis of several features. Earlier studies demonstrated high accuracy of the speech-in-noise test for predicting HL in 350 participants. In this study, preliminary results from the RF questionnaire (137 participants) and from the visual digit span test (DST) (78 participants) are presented. Despite the relatively small sample size, these findings indicate that the RF and DST may provide additional features that could be useful to characterize the overall individual profile, providing additional knowledge related to short-term memory performance and overall risk of HL and cognitive decline. Future research is needed to expand number of subjects tested, number of features analyzed, and the range of algorithms (including supervised and unsupervised machine learning) used to identify novel measures able to predict the individual hearing and cognitive abilities, also including components related to the individual risk.

Association Between Duration of SARS-CoV-2 Positivity and Long COVID.

In an observational study, we analyzed 1293 healthcare workers previously infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), of which 34.1% developed postacute sequelae of SARS-CoV-2 infection (also known as long COVID). Using a multivariate logistic regression model, we demonstrate that the likelihood of developing long COVID in infected individuals rises with the increasing of duration of infection and that 3 doses of the BNT162b2 vaccine are protective, even during the Omicron wave.

Physiologic dead space is independently associated with mortality and discharge of mechanically ventilated patients with COVID-19 ARDS: a retrospective study.

Physiologic dead space is a well-established independent predictor of death in patients with acute respiratory distress syndrome (ARDS). Here, we explore the association between a surrogate measure of dead space (DS) and early outcomes of mechanically ventilated patients admitted to Intensive Care Unit (ICU) because of COVID-19-associated ARDS. Retrospective cohort study on data derived from Italian ICUs during the first year of the COVID-19 epidemic. A competing risk Cox proportional hazard model was applied to test for the association of DS with two competing outcomes (death or discharge from the ICU) while adjusting for confounders. The final population consisted of 401 patients from seven ICUs. A significant association of DS with both death (HR 1.204; CI 1.019-1.423; p = 0.029) and discharge (HR 0.434; CI 0.414-0.456; p [Formula: see text]) was noticed even when correcting for confounding factors (age, sex, chronic obstructive pulmonary disease, diabetes, PaO[Formula: see text]/FiO[Formula: see text], tidal volume, positive end-expiratory pressure, and systolic blood pressure). These results confirm the important association between DS and death or ICU discharge in mechanically ventilated patients with COVID-19-associated ARDS. Further work is needed to identify the optimal role of DS monitoring in this setting and to understand the physiological mechanisms underlying these associations.

Efficacy of Six Different SARS-CoV-2 Vaccines during a Six-Month Follow-Up and Five COVID-19 Waves in Brazil and Mexico.

Comparisons among the different vaccines against SARS-CoV-2 are important to understand which type of vaccine provides more protection. This study aimed to evaluate the real-life efficacy through symptomatic infection and the humoral response of six different vaccines against SARS-CoV-2-BNT162b2, mRNA-1273, ChAdOx1-S, CoronaVac, Ad26.COV2, and Ad5-nCoV. This multicentric observational longitudinal study involved hospitals from Mexico and Brazil in which volunteers who received complete vaccination schemes were followed for 210 days after the last dose. SARS-CoV-2 Spike 1-2 IgG levels were taken before receiving the first vaccine, 21 days after each dose, and the last sample at six months (+/-1 month) after the last dose. A total of 1132 individuals exposed to five COVID-19 waves were included. All vaccines induced humoral responses, and mRNA vaccines had the highest antibody levels during follow-up. At six months, there was a decline in the SARS-CoV-2 Spike 1-2 IgG antibody titers of 69.5% and 36.4% in subjects with negative and positive history of infection respectively. Infection before vaccination and after complete vaccination scheme correlated with higher antibody titers. The predictors of infection were vaccination with CoronaVac compared to BNT162b2 and ChAdOx1-S. In the presence of comorbidities such as diabetes, rheumatoid arthritis, or dyslipidemia, CoronaVac lowered the risk of infection.

Adverse Events to Comirnaty Vaccine Are Linked to Sex, Age and BMI: Should We Consider Reducing the Dose for Females?

An important issue that is often neglected is the difference between male and female genders in response to medical treatments. In the context of COVID-19 vaccine administration, despite identical protocol strategies, it has been observed that females often suffer more adverse consequences than males. Here, we analyzed the adverse events (AEs) of the Comirnaty vaccine in a population of 2385 healthcare workers as a function of age, sex, COVID-19 history and BMI. Using logistic regression analysis, we showed that these variables may contribute to the development of AEs, particularly in young subjects, females and individuals with a BMI below 25 kg/m2. Moreover, partial dependence plots indicate a 50% probability of developing a mild AE for a long period of time (≥7 days) or a severe AE of any duration in women below 40 years old and with a BMI < 20 kg/m2. As this effect is more evident after the second dose of the vaccine, we propose to reduce the amount of vaccine for any additional booster dose in relation to age, sex and BMI. This strategy might reduce adverse events without affecting vaccine efficacy.

Understanding the role of emotion in decision making process: using machine learning to analyze physiological responses to visual, auditory, and combined stimulation.

Emotions significantly shape decision-making, and targeted emotional elicitations represent an important factor in neuromarketing, where they impact advertising effectiveness by capturing potential customers' attention intricately associated with emotional triggers. Analyzing biometric parameters after stimulus exposure may help in understanding emotional states. This study investigates autonomic and central nervous system responses to emotional stimuli, including images, auditory cues, and their combination while recording physiological signals, namely the electrocardiogram, blood volume pulse, galvanic skin response, pupillometry, respiration, and the electroencephalogram. The primary goal of the proposed analysis is to compare emotional stimulation methods and to identify the most effective approach for distinct physiological patterns. A novel feature selection technique is applied to further optimize the separation of four emotional states. Basic machine learning approaches are used in order to discern emotions as elicited by different kinds of stimulation. Electroencephalographic signals, Galvanic skin response and cardio-respiratory coupling-derived features provided the most significant features in distinguishing the four emotional states. Further findings highlight how auditory stimuli play a crucial role in creating distinct physiological patterns that enhance classification within a four-class problem. When combining all three types of stimulation, a validation accuracy of 49% was achieved. The sound-only and the image-only phases resulted in 52% and 44% accuracy respectively, whereas the combined stimulation of images and sounds led to 51% accuracy. Isolated visual stimuli yield less distinct patterns, necessitating more signals for relatively inferior performance compared to other types of stimuli. This surprising significance arises from limited auditory exploration in emotional recognition literature, particularly contrasted with the pleathora of studies performed using visual stimulation. In marketing, auditory components might hold a more relevant potential to significantly influence consumer choices.

Antibody Titer Correlates with Omicron Infection in Vaccinated Healthcare Workers.

The advent of vaccines against SARS-CoV-2 has drastically reduced the level of hospitalization with severe COVID-19 disease in infected individuals. However, the diffusion of variants of concern still challenge the protection conferred by vaccines raised against the wild-type form of the virus. Here, we have characterized the antibody response to the BNT162b2 (Comirnaty) mRNA vaccine in patients infected with the Omicron variant. We analyzed a population of 4354 vaccinated healthcare workers (HCW) from 7 different hospitals in Italy and monitored infection with SARS-CoV-2 Omicron. We correlated infection with the antibody response after vaccination. We found that a lower level of IgG, younger age, and the presence of allergies correlate with increased infection during the Omicron wave, and that infections correlate with wild-type spike protein antibody titers below 350 BAU/mL. These results support the necessity of a fourth booster dose, particularly for individuals with lower levels of antibodies.

A Reinforcement Learning Application for Optimal Fluid and Vasopressor Interventions in Septic ICU Patients.

Sepsis is one of the leading causes of death in ICU and its timely recognition and management are of primary importance. Resuscitation from hypotension in patients with sepsis is one of the first challenges that require fluid and/or vasopressor administrations. Unfortunately, clinical guidelines provide only indications of the strategy that should be adopted in this critical population but personalized strategies are still missing. In this study, we propose a comparative analysis of reinforcement learning applications on ICU data collected in the electronic health records and publicly available within the MIMIC-III database. The ultimate goal of the study is to estimate the optimal fluid and vasopressor administrations. Results show that, after the use of principal component analysis for reducing feature space dimensionality, model performances increased, thus suggesting that additional preprocessing strategies might be used for both reducing the computational cost and refining model performances. Clinical relevance In a context where clinical guidelines are not able to provide the best treatment strategies at a patient level, reinforcement learning applications trained on retrospectively collected data may be used for developing models able to suggest to clinicians the optimal dosage of fluids and/or vasopressors in order to improve 90-day patients' survival.

Characterization of Physiologic Patients' Response to Fluid Interventions in the Intensive Care Unit.

Fluid administration is one of the most common therapies performed on intensive care patients. However, no clinical evidence is available to establish optimal strategies for fluid management as well as characterizing the effects on the cardiovascular system after therapy initiation. Moreover, fluid overload showed a correlation with worse clinical outcomes. This study aims at characterizing the response to the fluid intervention of intensive care unit patients. We extracted a population of 57 subjects with available electrocardiogram and arterial blood pressure recordings from the MIMIC-III database and evaluated the induced changes in cardiovascular and autonomic indices. We compare autonomic indices obtained from a statistical model of heartbeat dynamics before and after the intervention. Results show significant differences in RR interval, blood pressure, autonomic and Baroreflex activities up to 60 minutes after fluid administration. Specifically, we observed a median increase in RR interval, Baroreflex activity, and overall activity both in pressure and RR time series, as well as a reduction in systolic blood pressure. Specifically, a subgroup of survived patients shows an imbalance toward sympathetic activity, whereas non-survivors have a persistent vagal state after fluid administration. Clinical relevance - The observed differences in autonomic response after fluid administration, together with the assessment of their correlation with patients' mortality, paves the way for the inclusion of heart rate variability indices as markers for assessing fluid responsiveness as associated with ICU patients' state.

Analysis of the skin conductance and pupil signals for evaluation of emotional elicitation by images and sounds.

Many studies in the literature attempt recognition of emotions through the use of videos or images, but very few have explored the role that sounds have in evoking emotions. In this study we have devised an experimental protocol for elicitation of emotions by using, separately and jointly, images and sounds from the widely used International Affective Pictures System and International Affective Digital Sounds databases. During the experiments we have recorded the skin conductance and pupillary signals and processed them with the goal of extracting indices linked to the autonomic nervous system, thus revealing specific patterns of behavior depending on the different stimulation modalities. Our results show that skin conductance helps discriminate emotions along the arousal dimension, whereas features derived from the pupillary signal are able to discriminate different states along both valence and arousal dimensions. In particular, the pupillary diameter was found to be significantly greater at increasing arousal and during elicitation of negative emotions in the phases of viewing images and images with sounds. In the sound-only phase, on the other hand, the power calculated in the high and very high frequency bands of the pupillary diameter were significantly greater at higher valence (valence ratings > 5). Clinical relevance- This study demonstrates the ability of physiological signals to assess specific emotional states by providing different activation patterns depending on the stimulation through images, sounds and images with sounds. The approach has high clinical relevance as it could be extended to evaluate mood disorders (e.g. depression, bipolar disorders, or just stress), or to use physiological patterns found for sounds in order to study whether hearing aids can lead to increased emotional perception.

Analysis of immunization time, amplitude, and adverse events of seven different vaccines against SARS-CoV-2 across four different countries.

Background: Scarce information exists in relation to the comparison of seroconversion and adverse events following immunization (AEFI) with different SARS-CoV-2 vaccines. Our aim was to correlate the magnitude of the antibody response to vaccination with previous clinical conditions and AEFI. Methods: A multicentric comparative study where SARS-CoV-2 spike 1-2 IgG antibodies IgG titers were measured at baseline, 21-28 days after the first and second dose (when applicable) of the following vaccines: BNT162b2 mRNA, mRNA-1273, Gam-COVID-Vac, Coronavac, ChAdOx1-S, Ad5-nCoV and Ad26.COV2. Mixed model and Poisson generalized linear models were performed. Results: We recruited 1867 individuals [52 (SD 16.8) years old, 52% men]. All vaccines enhanced anti-S1 and anti-S2 IgG antibodies over time (p<0.01). The highest increase after the first and second dose was observed in mRNA-1273 (p<0.001). There was an effect of previous SARS-CoV-2 infection; and an interaction of age with previous SARS-CoV-2 infection, Gam-COVID-Vac and ChAdOx1-S (p<0.01). There was a negative correlation of Severe or Systemic AEFI (AEs) of naïve SARS-CoV-2 subjects with age and sex (p<0.001); a positive interaction between the delta of antibodies with Gam-COVID-Vac (p=0.002). Coronavac, Gam-COVID-Vac and ChAdOx1-S had less AEs compared to BNT162b (p<0.01). mRNA-1273 had the highest number of AEFIs. The delta of the antibodies showed an association with AEFIs in previously infected individuals (p<0.001). Conclusions: The magnitude of seroconversion is predicted by age, vaccine type and SARS-CoV-2 exposure. AEs are correlated with age, sex, and vaccine type. The delta of the antibody response only correlates with AEs in patients previously exposed to SARS-CoV-2. Registration number: ClinicalTrials.gov, identifier NCT05228912.

Evaluation of Machine Learning Algorithms and Explainability Techniques to Detect Hearing Loss From a Speech-in-Noise Screening Test.

PURPOSE: The aim of this study was to analyze the performance of multivariate machine learning (ML) models applied to a speech-in-noise hearing screening test and investigate the contribution of the measured features toward hearing loss detection using explainability techniques. METHOD: Seven different ML techniques, including transparent (i.e., decision tree and logistic regression) and opaque (e.g., random forest) models, were trained and evaluated on a data set including 215 tested ears (99 with hearing loss of mild degree or higher and 116 with no hearing loss). Post hoc explainability techniques were applied to highlight the role of each feature in predicting hearing loss. RESULTS: Random forest (accuracy = .85, sensitivity = .86, specificity = .85, precision = .84) performed, on average, better than decision tree (accuracy = .82, sensitivity = .84, specificity = .80, precision = .79). Support vector machine, logistic regression, and gradient boosting had similar performance as random forest. According to post hoc explainability analysis on models generated using random forest, the features with the highest relevance in predicting hearing loss were age, number and percentage of correct responses, and average reaction time, whereas the total test time had the lowest relevance. CONCLUSIONS: This study demonstrates that a multivariate approach can help detect hearing loss with satisfactory performance. Further research on a bigger sample and using more complex ML algorithms and explainability techniques is needed to fully investigate the role of input features (including additional features such as risk factors and individual responses to low-/high-frequency stimuli) in predicting hearing loss.

Assessment of Sepsis in the ICU by Linear and Complex Characterization of Cardiovascular Dynamics.

Sepsis is one of the pathological conditions with the highest incidence in intensive care units. Sepsis-induced cardiac and autonomic dysfunction are well-known effects, among others, caused by a dysregulated host response to infection. In this context, we investigate the role of complex cardiovascular dynamics quantified through sample entropy indices from the inter-beat interval, systolic and diastolic blood pressure time series as well as the cross-entropy between heartbeat and systolic blood pressure in patients with sepsis in the first hour of intensive care when compared with non-septic subjects. Results show a significant (p<0.05) reduction in the probability of being septic for a unitary increase in entropy for systolic and diastolic time series (odds equal to 0.038 and 0.264, respectively) when adjusting for confounding factors. A significant (p<0.001) odds ratio (0.248) is observed also in cross-entropy, showing a reduced probability of being septic for an increase in heartbeat and systolic pressure asynchrony. The inclusion of our measures of complexity also determines an increase in the predictive ability (+0.03) of a logistic regression model reaching an area under the receiving operating and precision recall curves both equal to 0.95.Clinical relevance The study demonstrates the ability of information theory in catching a reduction of complex cardiovascular dynamics from vital signs commonly recorded in ICU. The considered complexity measures contribute to characterize sepsis development by showing a general loss of the interaction between heartbeat and pressure regulation. The extracted measures also improve the ability to identify sepsis in the first hour of intensive care.

Emotion recognition from multimodal physiological measurements based on an interpretable feature selection method.

Many studies in literature successfully use classification algorithms to classify emotions by means of physiological signals. However, there are still important limitations in interpretability of the results, i.e. lack of feature specific characterizations for each emotional state. To this extent, our study proposes a feature selection method that allows to determine the most informative subset of features extracted from physiological signals by maintaining their original dimensional space. Results show that features from the galvanic skin response are confirmed to be relevant in separating the arousal dimension, especially fear from happiness and relaxation. Furthermore, the average and the median value of the galvanic skin response signal together with the ratio between SD1 and SD2 from the Poincarè analysis of the electrocardiogram signal, were found to be the most important features for the discrimination along the valence dimension. A Linear Discriminant Analysis model using the first ten features sorted by importance, as defined by their ability to discriminate emotions with a bivariate approach, led to a three-class test accuracy in discriminating happiness, relaxation and fear equal to 72%, 67% and 89% respectively.Clinical relevance This study demonstrates the ability of physiological signals to assess the emotional state of different subjects, by providing a fast and efficient method to select most important indexes from the autonomic nervous system. The approach has high clinical relevance as it could be extended to assess other emotional states (e.g. stress and pain) characterizing pathological states such as post traumatic stress disorder and depression.

A novel artificial intelligence based intensive care unit monitoring system: using physiological waveforms to identify sepsis.

A massive amount of multimodal data are continuously collected in the intensive care unit (ICU) along each patient stay, offering a great opportunity for the development of smart monitoring devices based on artificial intelligence (AI). The two main sources of relevant information collected in the ICU are the electronic health records (EHRs) and vital sign waveforms continuously recorded at the bedside. While EHRs are already widely processed by AI algorithms for prompt diagnosis and prognosis, AI-based assessments of the patients' pathophysiological state using waveforms are less developed, and their use is still limited to real-time monitoring for basic visual vital sign feedback at the bedside. This study uses data from the MIMIC-III database (PhysioNet) to propose a novel AI approach in ICU patient monitoring that incorporates features estimated by a closed-loop cardiovascular model, with the specific goal of identifying sepsis within the first hour of admission. Our top benchmark results (AUROC = 0.92, AUPRC = 0.90) suggest that features derived by cardiovascular control models may play a key role in identifying sepsis, by continuous monitoring performed through advanced multivariate modelling of vital sign waveforms. This work lays foundations for a deeper data integration paradigm which will help clinicians in their decision-making processes. This article is part of the theme issue 'Advanced computation in cardiovascular physiology: new challenges and opportunities'.